Hi Duncan,
to be on the same page - what reference frame do you expect?
And what exactly is configured in the output frame option in TMM?
If you're using a Trimble VRS network (either Trimble Correction Hub or VRSNow) you get positions in a local frame - say NAD or an equivalent.
Your map is most likely based on WGS84 which is more or less equivalent to ITRF2014(Current).
This smells like a glitch in the datum settings - but without knowing the exact config its hard to tell.
The recent updates haven't touched the datum stuff; so the geoids are decoupled from this and SHOULD not affect anything. At least thats the theory.
Regards
Nico