Hm, I had written a whole explanation. Basically, the reference station is a piece of the moving station, so they should line up exactly. I literally took a just the piece of the whole scan, exported it then reimported it, registered it to the right location, then tried to register the full scan to the right location by matching it up with the piece. Anyone can see how they should have lined up and that the points I picked were very distinct. I even tried georeferencing and that didn't work either.
I don't see any notes to go with your image. In looking at it, it looks like you had way too little overlap between stations.