Levi,
It sounds like this project doesn't have the standard set of survey requirements as a standard construction site given that it's a small farm pond that doesn't require any permits. One option is to set up on the site with your base and rover and create your own control for the project with a one point calibration and shoot in some points you can tie to the PDF. Then you can simply Georeference the PDF in TBC using the control you established and build out your machine control design from there. If you import your Trimble calibration file (.dc or .cal) into TBC, you'll be able to export the whole machine control package for a Trimble enabled machine control in a simple export. It won't be absolutely perfect due to the nature of one point calibrations, but you'll be pretty close especially for a farm pond where the accuracy isn't as crucial as a standard construction site. If you have any further questions on that, I would suggest to enlist the help of your local SITECH for advice and training.